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IQVIA
Scientist II, Bioinformatics
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Based on New Mexico data
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What they do
A Bioinformatician uses computers and software tools to study biology and biology-related data. Conducts studies and maintains biology data; may develop specialized bioinformatics software. Analysis may be used for product development at a pharmaceutical company, disease research at a hospital or health policy research at a public health organization.
$96,655 / year median in New Mexico
+7% projected growth
Job Description
Santa Fe, NM, United States of America Full time
R1545386
- We are seeking Scientist II, Bioinformatics to join IQVIA Laboratories at Santa Fe, NM.
- We hire passionate innovators who drive healthcare forward through thoughtful and inclusive collaboration. If you want to discover a career with greater purpose, join us as we transform and accelerate research and development.
Job Summary:
- As a Scientist II, Bioinformatics, you will operate and steward Sanger and NGS sequencing analysis pipelines that support antibody discovery programs. You will combine hands-on wet-lab sequencing support with day-to-day informatics execution, delivering accurate, traceable sequence outputs and reports for discovery scientists on tight timelines.
What You'll Be Doing:
- + Operate established Sanger sequencing pipelines, including assembly, trimming, QC, variant calling, and delivery of curated sequence lists + Run NGS pipelines across Illumina, PacBio, and Oxford Nanopore workflows for antibody discovery, including paired-chain assembly, clonotyping, repertoire annotation, and longitudinal analysis + Manage the informatics queue by receiving analysis requests, scoping deliverables, setting timeline expectations, and tracking work in progress + Perform wet-lab work supporting sequencing operations, including NGS sample preparation, library QC, plate and sample tracking, Sanger submissions, and coordination with sequencing cores or vendors + Use AI coding assistants such as Claude, Claude Code, Copilot, or equivalent tools to author, extend, debug, and document pipelines, scripts, and reports while reviewing outputs for correctness + Develop, maintain, and run custom scripts, visualizations, Excel and PDF reports, and lightweight dashboards for discovery, program management, and customer-facing teams + Operate production sequencing workflows on AWS using S3, EC2, HPC or parallel compute, and pipeline frameworks such as Nextflow, Snakemake, or equivalent + Maintain complete documentation in Benchling and version-controlled repositories while performing quality checks to ensure reproducibility, accuracy, and traceability •
What We Are Looking For:
- + PhD in Bioinformatics, Computational Biology, Computer Science, Molecular Biology, Immunology, Biochemistry, or a closely related discipline (fresh PhD acceptable); OR MSc in a related discipline with 2+ years of directly relevant industry or academic experience + Hands-on exposure to sequencing data analysis, including Sanger and/or NGS analysis through thesis, coursework, academic research, or prior industry work + Demonstrated hands-on experience operating sequencing analysis pipelines for Sanger and at least one NGS platform, including Illumina, PacBio, or Oxford Nanopore + Wet-lab experience in molecular biology and/or NGS sample preparation + Working knowledge of AWS S3 and EC2, with willingness to grow into HPC, parallel compute, and pipeline orchestration frameworks such as Nextflow or Snakemake + Other equivalent combination of education, training, and experience may be accepted in lieu of degree •The Knowledge, Skills and Abilities Needed for
This Role:
- + Working knowledge of antibody discovery and antibody sequencing fundamentals, including library design, display campaigns, and sequencing-based readouts + Strong communication and customer-focus perspective, with the ability to triage and prioritize incoming sequencing-analysis requests + Quality-conscious approach with high ethics and integrity, including the ability to follow SOPs precisely while flagging anomalies and improvement opportunities + Ability to collaborate closely with wet-lab scientists, informatics teams, Project Managers, and Technical Supervisors to support accurate and timely delivery + Comfort using AI coding assistants as part of day-to-day work, including disciplined review of AI-generated code, analyses, and reports + Desirable experience with R, Streamlit, Dash, Plotly, FastAPI, PyTorch, scikit-learn, AlphaFold, RoseTTAFold, Benchling SDK or APIs, laboratory information systems, AWS Batch, or ParallelCluster •
What We Offer You:
- We put our employees at the center of everything we do and are committed to providing them, and their families, with benefits that meet their diverse and changing needs.