Part-Time Bioinformatics NGS Data Analyst Consultant (LC 34576-1) Position Available In Middlesex, Massachusetts

Part-Time Bioinformatics NGS Data Analyst Consultant (LC 34576-1) 4.1 4.1 out of 5 stars Cambridge, MA 02139 • Hybrid work PT work:

Desired Start Date:

6/30/2025

End Date:

12/31/2025

Hrs/Wk:

20.00 (negotiable) Work enviroment: Hybrid at Cambridge, MA

POSITION SUMMARY

The project focuses on the assay development of next-generation sequencing (NGS)-based viral detection. The role will transform existing bash and Python analysis programs into efficient Nextflow workflows. The successful candidate will have a proven track record in bioinformatics and Nextflow workflow development utilizing high-throughput sequencing data. They are expected to be detail-oriented, capable of working independently, and able to collaborate with project management and collaborators. Maintain detailed documentation of workflow processes and provide regular updates on project progress.

POSITION RESPONSIBILITIES

Develop and implement Nextflow workflows based on an existing analysis workflow to streamline our NGS-based viral detection processes. Translate existing analysis programs, initially developed in bash and python, into modular Nextflow workflows. Provide insights and recommendations for improvements in workflow design and tool utilization. Demonstrate strong understanding of bioinformatics tools and their application to NGS data analysis. Utilize tools, such as BLAST, STAR, Bowtie, samtools, and Python-based packages to optimize workflow performance and accuracy in the viral detection assay. Maintain comprehensive documentation of workflows on GitHub for reproducibility. Regular report on progress, challenges, and outcome to project management and collaborators.

ORGANIZATIONAL RELATIONSHIPS

Machine Learning and Computational Sciences (MLCS) group at Company Biotherapeutic Pharmaceutical Sciences (BTx Pharm Sci) group at Company

EDUCATION AND EXPERIENCE

Bachelor’s degree or higher in Bioinformatics, Computational Biology, Computer Science, or a related field. A Master’s degree or Ph.D. in a relevant discipline is preferred. Hands-on experience in bioinformatics workflow development, particularly with Nextflow, is required. Proven experience in programming using bash and Python in the context of NGS data analysis. Experience with version control system, particularly GitHub, for documentation and collaboration purposes.

TECHNICAL SKILLS REQUIREMENTS

Proficiency in developing bioinformatics workflow using Nextflow, with a strong understanding of its syntax, modules, processes, and configurations. Strong programming skills in Python. In-depth knowledge of bioinformatics tools commonly used in NGS data analysis, including BLAST, STAR, Bowtie, samtools, etc. Familiarity with high-performance computing environments (HPC) or cloud-based platforms. Proficiency in using version control systems such as Git for code management and collaboration.

Hard Skills:

1. Nextflow/Workflow scripting skills 2. Bioinformatics skill set 3.

Python Soft skills:

1. Communication (written/verbal)

Interview Process:

Teams Bridge with HM Virtual/In-person (Panel) IT Technical not Clinical / Scientific 20/hrs per wk (negotiable)

Job Types:

Part-time, Contract, Temporary Pay:

$35.00 – $48.00 per hour Expected hours: 20 per week

Schedule:

4 hour shift Day shift Monday to Friday Ability to

Commute:

Cambridge, MA 02139 (Preferred) Ability to

Relocate:

Cambridge, MA 02139: Relocate before starting work (Preferred)

Work Location:

Hybrid remote in Cambridge, MA 02139